If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ), 'gf_id' => 'HOM05D000846', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000846' ), 'data_identifier' => 'HOM05D000846', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000846', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18930' => 'bna', 'A02p05830' => 'bna', 'A03p09640' => 'bna', 'A03p57390' => 'bna', 'A10p19920' => 'bna', 'Aa31LG2G10810' => 'aar', 'Aa31LG2G1920' => 'aar', 'Aa31LG2G1930' => 'aar', 'Aa31LG9G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.811' => 'aag', 'Actinidia13468' => 'ach', 'Actinidia16249' => 'ach', 'Actinidia17184' => 'ach', 'Actinidia22462' => 'ach', 'Actinidia39034' => 'ach', 'Actinidia39350' => 'ach', 'Ah.02g131700' => 'amhyb', 'Ah.03g132090' => 'amhyb', 'Ah.03g133060' => 'amhyb', 'Ah.04g153080' => 'amhyb', 'Ah.04g161490' => 'amhyb', 'Ah.13g075490' => 'amhyb', 'AL1G57230' => 'aly', 'AL1G64660' => 'aly', 'AL6G31340' => 'aly', 'AL7G25080' => 'aly', 'Aqoxy1G00464' => 'aox', 'Aqoxy6G00235' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0XZV5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20BWRG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.233P6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.38ITRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E14VW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A1QYXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C6W9N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1DFKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DG3Y9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ6TCD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETC2YF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9CKH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9CBMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3R6RQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFV3BQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPA0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P10XZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6QNQL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPAP57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RBH7VQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCDH31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SBG0VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VK9VX5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2W0MN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH3CUZ' => 'arhy', 'AT4G27640' => 'ath', 'AT5G19820' => 'ath', 'ATR0665G276' => 'atr', 'ATR0737G013' => 'atr', 'Atru.chr11.1221' => 'acertr', 'Atru.chr3.2075' => 'acertr', 'AUR62015278' => 'cqu', 'AUR62019169' => 'cqu', 'AUR62026329' => 'cqu', 'AUR62026527' => 'cqu', 'AUR62032726' => 'cqu', 'AUR62040910' => 'cqu', 'BcaB01g04829' => 'bca', 'BcaB08g36574' => 'bca', 'BcaB08g36577' => 'bca', 'BcaC03g13713' => 'bca', 'BcaC04g19380' => 'bca', 'BcaC06g32677' => 'bca', 'BcaC09g50565' => 'bca', 'BcaNung01650' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p02100' => 'bna', 'BolC1t02333H' => 'bol', 'BolC2t06983H' => 'bol', 'BolC3t13591H' => 'bol', 'BolC7t46041H' => 'bol', 'BolC9t58501H' => 'bol', 'BraA01t01834Z' => 'bra', 'BraA02t05535Z' => 'bra', 'BraA03t10281Z' => 'bra', 'BraA03t14805Z' => 'bra', 'BraA10t44067Z' => 'bra', 'C01p23880' => 'bna', 'C03p11210' => 'bna', 'C07p55610' => 'bna', 'C09p56320' => 'bna', 'CAN.G1014.24' => 'can', 'CAN.G112.4' => 'can', 'CAN.G112.9' => 'can', 'CAN.G158.37' => 'can', 'CAN.G17.15' => 'can', 'CAN.G17241.1' => 'can', 'CAN.G17242.1' => 'can', 'CAN.G1834.16' => 'can', 'CAN.G18887.1' => 'can', 'CAN.G189.47' => 'can', 'CAN.G22.17' => 'can', 'CAN.G222.136' => 'can', 'CAN.G222.143' => 'can', 'CAN.G222.146' => 'can', 'CAN.G222.150' => 'can', 'CAN.G222.151' => 'can', 'CAN.G222.156' => 'can', 'CAN.G245.7' => 'can', 'CAN.G282.1' => 'can', 'CAN.G282.10' => 'can', 'CAN.G282.2' => 'can', 'CAN.G282.5' => 'can', 'CAN.G282.6' => 'can', 'CAN.G282.8' => 'can', 'CAN.G282.9' => 'can', 'CAN.G798.7' => 'can', 'CAN.G812.35' => 'can', 'CAN.G812.45' => 'can', 'CANSAT11G2272' => 'cansat', 'CANSAT25G3612' => 'cansat', 'CARHR055440' => 'chi', 'CARHR193070' => 'chi', 'CARHR235340' => 'chi', 'Carub.0002s0961' => 'cru', 'Carub.0006s1816' => 'cru', 'Carub.0007s1321' => 'cru', 'Ca_00067_v3' => 'car', 'Ca_01821_v3' => 'car', 'Ca_08277_v3' => 'car', 'Ca_14243_v3' => 'car', 'Ca_14726_v3' => 'car', 'Ca_17080_v3' => 'car', 'Ca_17081_v3' => 'car', 'Ca_17098_v3' => 'car', 'Ca_17933_v3' => 'car', 'Ca_17940_v3' => 'car', 'Ca_27627_v3' => 'car', 'CBR_g3136' => 'cbr', 'CBR_g74670' => 'cbr', 'Cc01_g00820' => 'ccan', 'Cc01_g00830' => 'ccan', 'Cc02_g22620' => 'ccan', 'CDE02G3911' => 'cde', 'CDE05G0387' => 'cde', 'Cfa005511' => 'cfa', 'Cfa007773' => 'cfa', 'Cfa007774' => 'cfa', 'Cfa009569' => 'cfa', 'Cfa017660' => 'cfa', 'Cfa021108' => 'cfa', 'Cfa025888' => 'cfa', 'Ciclev10003668m.g' => 'ccl', 'Ciclev10014097m.g' => 'ccl', 'Ciclev10018600m.g' => 'ccl', 'Ciclev10030583m.g' => 'ccl', 'CiPaw.06G146600' => 'cil', 'CiPaw.13G176200' => 'cil', 'CiPaw.14G136000' => 'cil', 'ClCG02G024340' => 'cla', 'ClCG04G005400' => 'cla', 'ClCG05G009620' => 'cla', 'COL.COLO4_00108' => 'col', 'COL.COLO4_07333' => 'col', 'COL.COLO4_08938' => 'col', 'COL.COLO4_27511' => 'col', 'COL.COLO4_27512' => 'col', 'COL.COLO4_32984' => 'col', 'COL.COLO4_35044' => 'col', 'Cpa.g.c40311' => 'cpa', 'Cpa.g.sc119.53' => 'cpa', 'Cpa.g.sc119.54' => 'cpa', 'Cpa.g.sc232.7' => 'cpa', 'Cpa.g.sc258.8' => 'cpa', 'Cpa.g.sc39.48' => 'cpa', 'Cpa.g.sc39.49' => 'cpa', 'Cre12.g490850' => 'cre', 'Cre14.g633750' => 'cre', 'Cre16.g688190' => 'cre', 'CsaV3_3G019110' => 'csa', 'CsaV3_4G012200' => 'csa', 'CsaV3_4G017480' => 'csa', 'CSS0000492' => 'camsi', 'CSS0005959' => 'camsi', 'CSS0018741' => 'camsi', 'CSS0024282' => 'camsi', 'CSS0029620' => 'camsi', 'DCAR_001823' => 'dca', 'DCAR_001982' => 'dca', 'DCAR_009683' => 'dca', 'Dinv11472' => 'din', 'Dinv13462' => 'din', 'Dinv13463' => 'din', 'Dinv19375' => 'din', 'Dinv24292' => 'din', 'Duzib106G0125' => 'dzi', 'Duzib106G0927' => 'dzi', 'Duzib150G1620' => 'dzi', 'Duzib168G1626' => 'dzi', 'Duzib170G0163' => 'dzi', 'Duzib177G0002' => 'dzi', 'Duzib251G0663' => 'dzi', 'ECA233G1019' => 'eca', 'ECA233G1721' => 'eca', 'ECA236G1359' => 'eca', 'ECA238G0011' => 'eca', 'ECA240G4115' => 'eca', 'EL10Ac1g00215' => 'bvu', 'EL10Ac3g06839' => 'bvu', 'EL10Ac4g10381' => 'bvu', 'EL10Ac5g11125' => 'bvu', 'EL10Ac6g13093' => 'bvu', 'EL10Ac9g22362' => 'bvu', 'EL10As7g23809' => 'bvu', 'Eucgr.I02730' => 'egr', 'Eucgr.J01771' => 'egr', 'FAN01G0254' => 'fan', 'FAN02G2627' => 'fan', 'FAN04G0084' => 'fan', 'FAN04G0309' => 'fan', 'FAN04G0759' => 'fan', 'FAN07G1115' => 'fan', 'FAN08G3691' => 'fan', 'FAN09G0017' => 'fan', 'FAN11G3655' => 'fan', 'FAN12G0315' => 'fan', 'FAN13G0149' => 'fan', 'FAN13G1889' => 'fan', 'FAN16G0262' => 'fan', 'FAN18G1915' => 'fan', 'FAN18G2713' => 'fan', 'FAN19G1021' => 'fan', 'FAN19G1586' => 'fan', 'FAN22G0417' => 'fan', 'FAN23G2082' => 'fan', 'FAN23G2878' => 'fan', 'FAN23G3022' => 'fan', 'FAN25G1662' => 'fan', 'FAN26G2258' => 'fan', 'FvH4_1g21402' => 'fve', 'FvH4_1g21410' => 'fve', 'FvH4_1g28300' => 'fve', 'FvH4_2g17651' => 'fve', 'FvH4_3g36740' => 'fve', 'FvH4_3g45470' => 'fve', 'FvH4_4g00410' => 'fve', 'FvH4_5g29150' => 'fve', 'FvH4_6g21440' => 'fve', 'FvH4_7g12651' => 'fve', 'Glyma.03G111400' => 'gma', 'Glyma.04G122150' => 'gma', 'Glyma.05G156900' => 'gma', 'Glyma.08G114900' => 'gma', 'Glyma.08G187000' => 'gma', 'Glyma.11G214000' => 'gma', 'Glyma.15G046000' => 'gma', 'Glyma.16G039900' => 'gma', 'Glyma.18G178100' => 'gma', 'Glyma.19G113200' => 'gma', 'Gohir.A05G308500' => 'ghi', 'Gohir.A06G103600' => 'ghi', 'Gohir.A11G234100' => 'ghi', 'Gohir.A13G209350' => 'ghi', 'Gohir.A13G209700' => 'ghi', 'Gohir.A13G209801' => 'ghi', 'Gohir.A13G210100' => 'ghi', 'Gohir.D05G309200' => 'ghi', 'Gohir.D06G110600' => 'ghi', 'Gohir.D11G245100' => 'ghi', 'Gohir.D13G214100' => 'ghi', 'Gorai.007G260800' => 'gra', 'Gorai.009G329500' => 'gra', 'Gorai.010G125900' => 'gra', 'Gorai.013G244400' => 'gra', 'GSVIVG01013290001' => 'vvi', 'GSVIVG01014714001' => 'vvi', 'GSVIVG01022879001' => 'vvi', 'GSVIVG01025460001' => 'vvi', 'GSVIVG01026307001' => 'vvi', 'GSVIVG01033417001' => 'vvi', 'GSVIVG01034283001' => 'vvi', 'HanXRQChr01g0021311' => 'han', 'HanXRQChr01g0029531' => 'han', 'HanXRQChr02g0057091' => 'han', 'HanXRQChr03g0073611' => 'han', 'HanXRQChr05g0152211' => 'han', 'HanXRQChr05g0162661' => 'han', 'HanXRQChr08g0236591' => 'han', 'HanXRQChr13g0393801' => 'han', 'HanXRQChr13g0405821' => 'han', 'HanXRQChr14g0438121' => 'han', 'HanXRQChr16g0511911' => 'han', 'HanXRQChr16g0529221' => 'han', 'Haze_01711' => 'cav', 'Haze_01712' => 'cav', 'Haze_14298' => 'cav', 'Haze_20486' => 'cav', 'Haze_20487' => 'cav', 'Haze_20488' => 'cav', 'Haze_22949' => 'cav', 'Hma1.2p1_0062F.1_g034260' => 'hma', 'Hma1.2p1_0628F.1_g192070' => 'hma', 'HPP92_006106' => 'vpl', 'HPP92_006107' => 'vpl', 'HPP92_006108' => 'vpl', 'HPP92_009356' => 'vpl', 'HPP92_009596' => 'vpl', 'HPP92_009597' => 'vpl', 'Hund15507' => 'sun', 'Hund19223' => 'sun', 'Hund21632' => 'sun', 'Hund24827' => 'sun', 'Lalb_Chr07g0186561' => 'lal', 'Lalb_Chr12g0205231' => 'lal', 'Lalb_Chr13g0295071' => 'lal', 'Lalb_Chr15g0085071' => 'lal', 'Lalb_Chr15g0085081' => 'lal', 'Lalb_Chr15g0085091' => 'lal', 'Lalb_Chr15g0085101' => 'lal', 'Lalb_Chr15g0085301' => 'lal', 'Lalb_Chr15g0085311' => 'lal', 'Lalb_Chr18g0053591' => 'lal', 'Lalb_Chr18g0053601' => 'lal', 'Lalb_Chr20g0117041' => 'lal', 'Lalb_Chr20g0123491' => 'lal', 'Lalb_Chr22g0359051' => 'lal', 'Lj1C1135G13' => 'lonja', 'Lj1g0019061' => 'lja', 'Lj2A732G49' => 'lonja', 'Lj4g0011106' => 'lja', 'Lj4g0015088' => 'lja', 'Lj6g0016262' => 'lja', 'Lj6g0026631' => 'lja', 'Lsat_1_v5_gn_1_67421' => 'lsa', 'Lsat_1_v5_gn_2_58401' => 'lsa', 'Lsat_1_v5_gn_3_74400' => 'lsa', 'Lsat_1_v5_gn_4_148101' => 'lsa', 'Lsat_1_v5_gn_4_172100' => 'lsa', 'Lsat_1_v5_gn_5_36141' => 'lsa', 'Lsat_1_v5_gn_5_49981' => 'lsa', 'Lsat_1_v5_gn_6_52680' => 'lsa', 'Lsat_1_v5_gn_7_57820' => 'lsa', 'Lsat_1_v5_gn_7_58540' => 'lsa', 'Lsat_1_v5_gn_7_78561' => 'lsa', 'Lsat_1_v5_gn_7_78740' => 'lsa', 'Lsat_1_v5_gn_7_91480' => 'lsa', 'Lsat_1_v5_gn_9_118641' => 'lsa', 'Lsat_1_v5_gn_9_124500' => 'lsa', 'Manes.02G079600' => 'mes', 'Manes.03G080600' => 'mes', 'Manes.03G098333' => 'mes', 'Manes.09G140000' => 'mes', 'Manes.12G140600' => 'mes', 'Manes.12G140700' => 'mes', 'Manes.13G089875' => 'mes', 'Manes.15G108300' => 'mes', 'Mapoly0006s0259' => 'mpo', 'Mapoly0029s0100' => 'mpo', 'MBI01_g09375_MAGBIO' => 'mbi', 'MBI01_g25633_MAGBIO' => 'mbi', 'MBI01_g31842_MAGBIO' => 'mbi', 'MBI01_g42810_MAGBIO' => 'mbi', 'MBI04_g09714_MAGBIO' => 'mbi', 'MBI04_g13257_MAGBIO' => 'mbi', 'MBI08_g37958_MAGBIO' => 'mbi', 'MBI15_g36945_MAGBIO' => 'mbi', 'MCO04G278' => 'mco', 'MCO06G140' => 'mco', 'MD00G1158900' => 'mdo', 'MD03G1004600' => 'mdo', 'MD03G1004700' => 'mdo', 'MD04G1004400' => 'mdo', 'MD05G1225200' => 'mdo', 'MD08G1233700' => 'mdo', 'MD08G1233800' => 'mdo', 'MD08G1233900' => 'mdo', 'MD08G1234100' => 'mdo', 'MD11G1005300' => 'mdo', 'MD11G1005500' => 'mdo', 'MD11G1005800' => 'mdo', 'MD15G1425400' => 'mdo', 'MD17G1181400' => 'mdo', 'MD17G1262100' => 'mdo', 'MD17G1262200' => 'mdo', 'Medtr2g006750' => 'mtr', 'Medtr3g064910' => 'mtr', 'Medtr3g064930' => 'mtr', 'Medtr3g064935' => 'mtr', 'Medtr3g064940' => 'mtr', 'Medtr3g064980' => 'mtr', 'Medtr3g065000' => 'mtr', 'Medtr3g065010' => 'mtr', 'Medtr7g085820' => 'mtr', 'Medtr7g098920' => 'mtr', 'Medtr8g085950' => 'mtr', 'Medtr8g099855' => 'mtr', 'MELO3C008811.2' => 'cme', 'MELO3C014721.2' => 'cme', 'MELO3C019464.2' => 'cme', 'Migut.B00826' => 'egut', 'Migut.D02553' => 'egut', 'Migut.D02582' => 'egut', 'Migut.N00563' => 'egut', 'MSTRG.16514' => 'ama', 'MSTRG.18015' => 'ama', 'MSTRG.18877' => 'ama', 'Nitab4.5_0000023g0620' => 'nta', 'Nitab4.5_0000027g0400' => 'nta', 'Nitab4.5_0000027g0410' => 'nta', 'Nitab4.5_0000176g0040' => 'nta', 'Nitab4.5_0000551g0160' => 'nta', 'Nitab4.5_0000551g0170' => 'nta', 'Nitab4.5_0000551g0220' => 'nta', 'Nitab4.5_0000551g0240' => 'nta', 'Nitab4.5_0000551g0270' => 'nta', 'Nitab4.5_0000645g0070' => 'nta', 'Nitab4.5_0000645g0080' => 'nta', 'Nitab4.5_0000816g0070' => 'nta', 'Nitab4.5_0000827g0080' => 'nta', 'Nitab4.5_0001088g0040' => 'nta', 'Nitab4.5_0001088g0070' => 'nta', 'Nitab4.5_0001088g0090' => 'nta', 'Nitab4.5_0001088g0100' => 'nta', 'Nitab4.5_0001499g0110' => 'nta', 'Nitab4.5_0001730g0030' => 'nta', 'Nitab4.5_0002175g0030' => 'nta', 'Nitab4.5_0002175g0040' => 'nta', 'Nitab4.5_0002175g0060' => 'nta', 'Nitab4.5_0002175g0070' => 'nta', 'Nitab4.5_0002214g0010' => 'nta', 'Nitab4.5_0002214g0020' => 'nta', 'Nitab4.5_0002214g0140' => 'nta', 'Nitab4.5_0002411g0030' => 'nta', 'Nitab4.5_0002465g0070' => 'nta', 'Nitab4.5_0002866g0010' => 'nta', 'Nitab4.5_0002866g0020' => 'nta', 'Nitab4.5_0002866g0030' => 'nta', 'Nitab4.5_0003099g0010' => 'nta', 'Nitab4.5_0003099g0020' => 'nta', 'Nitab4.5_0003099g0030' => 'nta', 'Nitab4.5_0003099g0040' => 'nta', 'Nitab4.5_0003163g0010' => 'nta', 'Nitab4.5_0003163g0020' => 'nta', 'Nitab4.5_0003163g0030' => 'nta', 'Nitab4.5_0003163g0040' => 'nta', 'Nitab4.5_0003163g0050' => 'nta', 'Nitab4.5_0003163g0070' => 'nta', 'Nitab4.5_0004539g0010' => 'nta', 'Nitab4.5_0004539g0030' => 'nta', 'Nitab4.5_0005156g0020' => 'nta', 'Nitab4.5_0005748g0020' => 'nta', 'Nitab4.5_0005748g0030' => 'nta', 'Nitab4.5_0005748g0040' => 'nta', 'Nitab4.5_0006700g0020' => 'nta', 'Nitab4.5_0006700g0030' => 'nta', 'Nitab4.5_0007449g0010' => 'nta', 'Nitab4.5_0007449g0020' => 'nta', 'Nitab4.5_0008410g0020' => 'nta', 'Nitab4.5_0008768g0060' => 'nta', 'Nitab4.5_0008864g0010' => 'nta', 'Nitab4.5_0009923g0010' => 'nta', 'Nitab4.5_0010065g0010' => 'nta', 'Nitab4.5_0010264g0010' => 'nta', 'Nitab4.5_0010336g0020' => 'nta', 'Nitab4.5_0010504g0020' => 'nta', 'Nitab4.5_0011343g0010' => 'nta', 'Nitab4.5_0012584g0010' => 'nta', 'Nitab4.5_0014073g0010' => 'nta', 'Nitab4.5_0016475g0010' => 'nta', 'Nn1g08833' => 'nnu', 'Nn2g15844' => 'nnu', 'Nn3g17031' => 'nnu', 'Nn5g28327' => 'nnu', 'Nn5g29287' => 'nnu', 'Nn7g35879' => 'nnu', 'Oeu005325.1' => 'oeu', 'Oeu008902.1' => 'oeu', 'Oeu008904.1' => 'oeu', 'Oeu047829.1' => 'oeu', 'Oeu047830.1' => 'oeu', 'Os03g0261900' => 'osa', 'Os03g0261950' => 'osa', 'Os03g0701000' => 'osa', 'Os07g0575100' => 'osa', 'Peaxi162Scf00011g00530' => 'pax', 'Peaxi162Scf00017g02641' => 'pax', 'Peaxi162Scf00021g02619' => 'pax', 'Peaxi162Scf00024g03216' => 'pax', 'Peaxi162Scf00064g00024' => 'pax', 'Peaxi162Scf00078g01421' => 'pax', 'Peaxi162Scf00079g01418' => 'pax', 'Peaxi162Scf00115g00051' => 'pax', 'Peaxi162Scf00115g00056' => 'pax', 'Peaxi162Scf00115g00059' => 'pax', 'Peaxi162Scf00115g00510' => 'pax', 'Peaxi162Scf00132g01313' => 'pax', 'Peaxi162Scf00150g00912' => 'pax', 'Peaxi162Scf00150g00913' => 'pax', 'Peaxi162Scf00160g00121' => 'pax', 'Peaxi162Scf00160g00132' => 'pax', 'Peaxi162Scf00160g00212' => 'pax', 'Peaxi162Scf00160g00313' => 'pax', 'Peaxi162Scf00160g00315' => 'pax', 'Peaxi162Scf00273g01016' => 'pax', 'Peaxi162Scf00300g00717' => 'pax', 'Peaxi162Scf00300g00721' => 'pax', 'Peaxi162Scf00300g00724' => 'pax', 'Peaxi162Scf00367g00055' => 'pax', 'Peaxi162Scf00367g00061' => 'pax', 'Peaxi162Scf00528g00003' => 'pax', 'Peaxi162Scf00646g00018' => 'pax', 'Peaxi162Scf00705g00018' => 'pax', 'Peaxi162Scf00705g00114' => 'pax', 'Peaxi162Scf00738g00214' => 'pax', 'Peaxi162Scf00783g00041' => 'pax', 'Peaxi162Scf00791g00023' => 'pax', 'Peaxi162Scf00791g00043' => 'pax', 'Peaxi162Scf00791g00311' => 'pax', 'Peaxi162Scf00791g00313' => 'pax', 'Peaxi162Scf00791g00316' => 'pax', 'Peaxi162Scf00791g00422' => 'pax', 'Peaxi162Scf00876g00317' => 'pax', 'Peaxi162Scf01002g00214' => 'pax', 'Peaxi162Scf01890g00002' => 'pax', 'Peaxi162Scf01890g00023' => 'pax', 'Peaxi162Scf01890g00025' => 'pax', 'Peaxi162Scf01890g00028' => 'pax', 'PGR119G0816' => 'pgr', 'PGR142G3343' => 'pgr', 'PGSC0003DMG400013325' => 'stu', 'PGSC0003DMG400015862' => 'stu', 'PGSC0003DMG400023766' => 'stu', 'PGSC0003DMG400029568' => 'stu', 'PGSC0003DMG400032172' => 'stu', 'PGSC0003DMG400032173' => 'stu', 'PGSC0003DMG400032215' => 'stu', 'PGSC0003DMG400033831' => 'stu', 'PGSC0003DMG401004281' => 'stu', 'Phvul.001G111900' => 'pvu', 'Phvul.001G228200' => 'pvu', 'Phvul.002G237200' => 'pvu', 'Phvul.006G215200' => 'pvu', 'Potri.001G004800' => 'ptr', 'Potri.003G220100' => 'ptr', 'Potri.004G082601' => 'ptr', 'Potri.004G122133' => 'ptr', 'Potri.007G084100' => 'ptr', 'Potri.007G084501' => 'ptr', 'Potri.007G084901' => 'ptr', 'Potri.008G085800' => 'ptr', 'Potri.010G169800' => 'ptr', 'Potri.013G056600' => 'ptr', 'Potri.017G137400' => 'ptr', 'Pp3c11_22120' => 'ppa', 'Pp3c4_7610' => 'ppa', 'Pp3c7_4470' => 'ppa', 'PRCOL_00001905' => 'pco', 'PRCOL_00005470' => 'pco', 'Prupe.1G004100' => 'ppe', 'Prupe.1G571100' => 'ppe', 'Prupe.6G004500' => 'ppe', 'Prupe.7G004800' => 'ppe', 'Psat0ss3759g0400' => 'psa', 'Psat0ss3759g0440' => 'psa', 'Psat1g061200' => 'psa', 'Psat1g221240' => 'psa', 'Psat3g088560' => 'psa', 'Psat3g141160' => 'psa', 'Psat3g141280' => 'psa', 'Psat5g118760' => 'psa', 'Psat5g119240' => 'psa', 'Psat5g119320' => 'psa', 'Psat5g119520' => 'psa', 'Psat5g119560' => 'psa', 'Psat5g216600' => 'psa', 'Psat7g071840' => 'psa', 'Psat7g109080' => 'psa', 'PSO170G2918' => 'pso', 'PSO339G0944' => 'pso', 'PSO339G3564' => 'pso', 'PSO339G3743' => 'pso', 'PSO339G6196' => 'pso', 'PSO384G0708' => 'pso', 'PSO384G0940' => 'pso', 'PSO384G1902' => 'pso', 'PSO528G0036' => 'pso', 'QL01p008767' => 'qlo', 'QL02p099167' => 'qlo', 'QL03p043600' => 'qlo', 'QL06p004842' => 'qlo', 'QL07p018675' => 'qlo', 'RcHm_v2.0_Chr2g0142151' => 'rch', 'RcHm_v2.0_Chr2g0142161' => 'rch', 'RcHm_v2.0_Chr3g0475691' => 'rch', 'RcHm_v2.0_Chr3g0496831' => 'rch', 'RcHm_v2.0_Chr4g0399761' => 'rch', 'RcHm_v2.0_Chr4g0399771' => 'rch', 'RcHm_v2.0_Chr4g0399781' => 'rch', 'RcHm_v2.0_Chr4g0419561' => 'rch', 'RcHm_v2.0_Chr5g0054081' => 'rch', 'RcHm_v2.0_Chr5g0054171' => 'rch', 'RcHm_v2.0_Chr5g0054201' => 'rch', 'RcHm_v2.0_Chr5g0054221' => 'rch', 'RcHm_v2.0_Chr5g0054251' => 'rch', 'RcHm_v2.0_Chr5g0083261' => 'rch', 'RcHm_v2.0_Chr6g0253081' => 'rch', 'RcHm_v2.0_Chr6g0253091' => 'rch', 'RcHm_v2.0_Chr7g0221821' => 'rch', 'Rhsim05G0119700' => 'rsi', 'Rhsim13G0232100' => 'rsi', 'Sabra01G0003400' => 'sbr', 'Sabra03G0030700' => 'sbr', 'Sabra03G0163800' => 'sbr', 'Sabra04G0055100' => 'sbr', 'Sabra07G0069400' => 'sbr', 'Sabra07G0069900' => 'sbr', 'Sabra07G0070200' => 'sbr', 'Sabra08G0063600' => 'sbr', 'Sabra10G0129600' => 'sbr', 'Sabra13G0050300' => 'sbr', 'Sabra17G0112000' => 'sbr', 'Sabra17G0114700' => 'sbr', 'SalBow2G2087' => 'sbo', 'SalBow3G1351' => 'sbo', 'Sc07g0004850' => 'sci', 'Sc13g0002580' => 'sci', 'Sed0011851' => 'sed', 'Sed0016152' => 'sed', 'Sed0016818' => 'sed', 'Sed0017696' => 'sed', 'Sed0025663' => 'sed', 'SEGI_02774' => 'sgi', 'SEGI_07347' => 'sgi', 'SEGI_11014' => 'sgi', 'SEGI_18416' => 'sgi', 'SEGI_34980' => 'sgi', 'SEGI_41093' => 'sgi', 'SGA_v2.0_scaffold110G31332' => 'sas', 'SGA_v2.0_scaffold3G01667' => 'sas', 'SGA_v2.0_scaffold6G03295' => 'sas', 'SGA_v2.0_scaffold6G03389' => 'sas', 'SHI37023' => 'shi', 'SMO364G0838' => 'smo', 'SMO367G0546' => 'smo', 'Solyc01g044360.4' => 'sly', 'Solyc01g104070.3' => 'sly', 'Solyc08g074460.3' => 'sly', 'Solyc11g011790.3' => 'sly', 'Solyc11g011800.3' => 'sly', 'Sopen01g018340' => 'spe', 'Sopen01g046480' => 'spe', 'Sopen08g023100' => 'spe', 'Sopen08g023120' => 'spe', 'Sopen11g006640' => 'spe', 'Sp6g24590' => 'spa', 'Sp7g25600' => 'spa', 'TAR369G0768' => 'tar', 'TAR369G0915' => 'tar', 'TAR369G0998' => 'tar', 'TAR381G0552' => 'tar', 'TAR623G0248' => 'tar', 'TAR623G1742' => 'tar', 'TAR633G1516' => 'tar', 'TAR633G2173' => 'tar', 'TAR636G0291' => 'tar', 'TAR636G2041' => 'tar', 'THA.LOC104805711' => 'tha', 'THA.LOC104805768' => 'tha', 'THA.LOC104807532' => 'tha', 'THA.LOC104811074' => 'tha', 'Thecc.02G295900' => 'tca', 'Thecc.05G248400' => 'tca', 'Thecc.09G207700' => 'tca', 'Thhalv10012502m.g' => 'esa', 'Thhalv10024293m.g' => 'esa', 'TPR.G11022' => 'tpr', 'TPR.G11104' => 'tpr', 'TPR.G18236' => 'tpr', 'TPR.G2061' => 'tpr', 'TPR.G221' => 'tpr', 'TPR.G26663' => 'tpr', 'TPR.G26674' => 'tpr', 'TPR.G26693' => 'tpr', 'TPR.G26696' => 'tpr', 'TPR.G39917' => 'tpr', 'TPR.G8979' => 'tpr', 'TWI32G0486' => 'twi', 'TWI34G0530' => 'twi', 'TWI34G0543' => 'twi', 'TWI34G1521' => 'twi', 'TWI34G1671' => 'twi', 'TWI60G0703' => 'twi', 'TWI74G0335' => 'twi', 'unitig_21.g20912' => 'ugi', 'unitig_62.g23536' => 'ugi', 'vmacro04234' => 'vma', 'vmacro19885' => 'vma', 'vmacro20493' => 'vma', 'VMungo0251G1430' => 'vmu', 'VMungo0251G2214' => 'vmu', 'VMungo0540G0381' => 'vmu', 'VMungo1383G1001' => 'vmu', 'VMungo1383G1889' => 'vmu', 'Zm00001eb011450' => 'zma', 'Zm00001eb054090' => 'zma', 'Zm00001eb107510' => 'zma', 'Zm00001eb325270' => 'zma' ) $gf_id = 'HOM05D000846' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000846' ) $data_identifier = 'HOM05D000846' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 2, 'arhy' => (int) 25, 'ath' => (int) 2, 'atr' => (int) 2, 'acertr' => (int) 2, 'cqu' => (int) 6, 'bca' => (int) 8, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 28, 'cansat' => (int) 2, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 11, 'cbr' => (int) 2, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 3, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 7, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 7, 'egr' => (int) 2, 'fan' => (int) 23, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 11, 'gra' => (int) 4, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 4, 'lal' => (int) 14, 'lonja' => (int) 2, 'lja' => (int) 5, 'lsa' => (int) 15, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 8, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 63, 'nnu' => (int) 6, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 43, 'pgr' => (int) 2, 'stu' => (int) 9, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 3, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 15, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 17, 'rsi' => (int) 2, 'sbr' => (int) 12, 'sbo' => (int) 2, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 2, 'tar' => (int) 10, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 3, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325270' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1